Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs60613582 chr19:16245870 GGAGTTCA/G 7.61E-5 110 16.23 8.13 0 KM Plot
LAML rs60689962 chr2:1053513 T/TG 2.41E-8 105 15.17 16.27 0 KM Plot
LAML rs60941325 chr2:1882887 C/T 0.000134 110 13.15 16.23 0 KM Plot
LAML rs609740 chr13:71341673 A/G 1.71E-5 111 0 5 16.23 KM Plot
LAML rs60987980 chr2:1052002 C/T 1.55E-8 105 14.13 16.3 0 KM Plot
LAML rs61300993 chr2:3218725 C/CCT 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs61627965 chr19:33910831 C/T 3.24E-5 110 16.17 12.17 3 KM Plot
LAML rs61733126 chr16:71712786 A/G 0.000186 108 15.2 13.1 0 KM Plot
LAML rs61833260 chr10:975148 T/G 6.36E-5 111 15.23 16.17 5.1 KM Plot
LAML rs61862752 chr10:134970009 T/C 1.27E-5 111 16.3 17.82 4.05 KM Plot
LAML rs61862757 chr10:134974556 G/C 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs61867042 chr10:78936202 C/T 0.000132 110 15.23 15.73 0 KM Plot
LAML rs61867043 chr10:78945499 T/C 0.000118 111 14.22 15.73 0 KM Plot
LAML rs61867046 chr10:78962341 T/C 0.000118 111 14.22 15.73 0 KM Plot
LAML rs61867048 chr10:78972964 C/T 0.000118 111 14.22 15.73 0 KM Plot